Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs11789473 chr9:37954424 T/G 7.22E-7 507 22.73 20.92 5.03 KM Plot
LGG rs11792678 chr9:38020036 A/G 0 508 22.67 21.1 2.47 KM Plot
LGG rs11812170 chr10:879697 C/T 4.42E-7 509 21.7 24.5 14.43 KM Plot
LGG rs11812523 chr10:915638 C/T 3.76E-8 507 21.7 24.52 14.15 KM Plot
LGG rs11813210 chr10:919796 G/A 2.78E-8 507 21.77 24.5 14.15 KM Plot
LGG rs11815185 chr10:923617 T/A 5.39E-8 507 21.87 24.15 14.15 KM Plot
LGG rs11816064 chr10:931176 A/C 9.49E-8 508 21.83 24.07 14.15 KM Plot
LGG rs11818288 chr10:905050 A/C 3.39E-8 505 21.77 24.5 14.15 KM Plot
LGG rs11818325 chr10:879756 G/A 4.42E-7 509 21.7 24.5 14.43 KM Plot
LGG rs11847840 chr14:24412916 C/T 4.04E-5 508 23.63 21.15 15.53 KM Plot
LGG rs11852080 chr14:24412772 T/G 4.04E-5 508 23.63 21.15 15.53 KM Plot
LGG rs11852089 chr14:24412847 T/C 4.04E-5 508 23.63 21.15 15.53 KM Plot
LGG rs11914785 chr3:153676298 T/A 0 506 22.1 22.73 0.23 KM Plot
LGG rs11915886 chr3:153677273 T/C 0 506 21.83 22.78 0.23 KM Plot
LGG rs11917491 chr3:153669848 A/G 0 509 22.58 22.3 0.23 KM Plot